IL_9VTH_010

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_010 not in the Motif Atlas

Homologous match to IL_9PN5_149

Geometric discrepancy: 0.0839

The information below is about IL_9PN5_149

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9VTH|1|11|G|110
9VTH|1|11|U|111
9VTH|1|11|U|112
9VTH|1|11|A|113
*
9VTH|1|11|U|306
9VTH|1|11|U|307
9VTH|1|11|U|308
9VTH|1|11|C|309

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S11

Chain SQ

40S ribosomal protein S4

Chain ST

40S ribosomal protein S8