IL_9VTH_012
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUGUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_012 not in the Motif Atlas
- Homologous match to IL_9H3G_164
- Geometric discrepancy: 0.0957
- The information below is about IL_9H3G_164
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.4
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|U|118
9VTH|1|11|U|119
9VTH|1|11|G|120
9VTH|1|11|U|121
9VTH|1|11|U|122
9VTH|1|11|U|123
*
9VTH|1|11|A|299
9VTH|1|11|U|300
9VTH|1|11|U|301
9VTH|1|11|C|302
9VTH|1|11|A|303
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S4
- Chain ST
- 40S ribosomal protein S8
Coloring options: