IL_9VTH_013

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9VTH|1|11|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_013 not in the Motif Atlas

Homologous match to IL_9H3G_165

Geometric discrepancy: 0.1078

The information below is about IL_9H3G_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9VTH|1|11|G|141
9VTH|1|11|G|142
9VTH|1|11|A|143
9VTH|1|11|U|144
9VTH|1|11|A|145
9VTH|1|11|A|146
9VTH|1|11|C|147
*
9VTH|1|11|G|163
9VTH|1|11|C|164
9VTH|1|11|U|165
9VTH|1|11|A|166
9VTH|1|11|A|167
9VTH|1|11|U|168
9VTH|1|11|A|169
9VTH|1|11|C|170

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain SZ

40S ribosomal protein S24