IL_9VTH_021
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAUCAA*UGGUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|11|U|317, 9VTH|1|11|U|355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_021 not in the Motif Atlas
- Homologous match to IL_9H3G_173
- Geometric discrepancy: 0.0993
- The information below is about IL_9H3G_173
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|11|U|315
9VTH|1|11|A|316
9VTH|1|11|U|317
9VTH|1|11|C|318
9VTH|1|11|A|319
9VTH|1|11|A|320
*
9VTH|1|11|U|352
9VTH|1|11|G|353
9VTH|1|11|G|354
9VTH|1|11|U|355
9VTH|1|11|G|356
9VTH|1|11|A|357
9VTH|1|11|C|358
9VTH|1|11|G|359
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain SJ
- 40S ribosomal protein S23
- Chain SN
- 40S ribosomal protein S11
- Chain ST
- 40S ribosomal protein S8
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