IL_9VTH_025

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_025 not in the Motif Atlas

Homologous match to IL_9PN5_163

Geometric discrepancy: 0.1625

The information below is about IL_9PN5_163

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9VTH|1|11|C|415
9VTH|1|11|A|416
9VTH|1|11|U|417
*
9VTH|1|11|A|424
9VTH|1|11|A|425
9VTH|1|11|G|426

Current chains

Chain 11

18S rRNA

Nearby chains

Chain LH

60S ribosomal protein L23

Chain SR

40S ribosomal protein S6