IL_9VTH_035

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9VTH|1|11|A|582, 9VTH|1|11|U|584, 9VTH|1|11|U|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_035 not in the Motif Atlas

Homologous match to IL_9PN5_173

Geometric discrepancy: 0.1626

The information below is about IL_9PN5_173

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9VTH|1|11|G|565
9VTH|1|11|U|566
9VTH|1|11|G|567
9VTH|1|11|C|568
9VTH|1|11|C|569
9VTH|1|11|A|570
9VTH|1|11|G|571
*
9VTH|1|11|C|578
9VTH|1|11|G|579
9VTH|1|11|G|580
9VTH|1|11|U|581
9VTH|1|11|A|582
9VTH|1|11|A|583
9VTH|1|11|U|584
9VTH|1|11|U|585
9VTH|1|11|C|586

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SB

30S ribosomal protein S3, chloroplastic

Chain SJ

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30