IL_9VTH_039
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_039 not in the Motif Atlas
- Homologous match to IL_9PN5_176
- Geometric discrepancy: 0.0704
- The information below is about IL_9PN5_176
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.4
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 21
Unit IDs
9VTH|1|11|C|630
9VTH|1|11|G|631
9VTH|1|11|U|632
9VTH|1|11|A|633
9VTH|1|11|G|634
*
9VTH|1|11|U|971
9VTH|1|11|C|972
9VTH|1|11|A|973
9VTH|1|11|A|974
9VTH|1|11|G|975
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain SF
- Small ribosomal subunit protein uS8c
- Chain SJ
- 40S ribosomal protein S23
- Chain SM
- 40S ribosomal protein S13
- Chain SN
- 40S ribosomal protein S11
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