IL_9VTH_040

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_040 not in the Motif Atlas

Homologous match to IL_9PN5_178

Geometric discrepancy: 0.0713

The information below is about IL_9PN5_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.5

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

26

Unit IDs

9VTH|1|11|A|750
9VTH|1|11|C|751
*
9VTH|1|11|G|806
9VTH|1|11|G|807
9VTH|1|11|A|808
9VTH|1|11|U|809

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS8c

Chain SJ

40S ribosomal protein S23

Chain SN

40S ribosomal protein S11

Chain SS

40S ribosomal protein S7