IL_9VTH_050

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

9VTH|1|11|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_050 not in the Motif Atlas

Homologous match to IL_9H3G_202

Geometric discrepancy: 0.0972

The information below is about IL_9H3G_202

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9VTH|1|11|G|898
9VTH|1|11|U|899
9VTH|1|11|C|900
9VTH|1|11|A|901
9VTH|1|11|G|902
*
9VTH|1|11|C|913
9VTH|1|11|U|914
9VTH|1|11|U|915
9VTH|1|11|G|916
9VTH|1|11|G|917
9VTH|1|11|A|918
9VTH|1|11|U|919
9VTH|1|11|U|920

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S14-2

Chain SP

Small ribosomal subunit protein eS1