IL_9VTH_051

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGCUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_051 not in the Motif Atlas

Homologous match to IL_9PN5_189

Geometric discrepancy: 0.0744

The information below is about IL_9PN5_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9VTH|1|11|G|988
9VTH|1|11|G|989
9VTH|1|11|G|990
9VTH|1|11|C|991
9VTH|1|11|U|992
9VTH|1|11|C|993
*
9VTH|1|11|G|1017
9VTH|1|11|U|1018
9VTH|1|11|C|1019

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LB

60S ribosomal protein L8-like

Chain SI

40S ribosomal protein S14-2

Chain Sb

40S ribosomal protein S26