IL_9VTH_052

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAG*CCUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_052 not in the Motif Atlas

Homologous match to IL_9H3G_204

Geometric discrepancy: 0.0613

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9VTH|1|11|C|993
9VTH|1|11|G|994
9VTH|1|11|A|995
9VTH|1|11|A|996
9VTH|1|11|G|997
*
9VTH|1|11|C|1013
9VTH|1|11|C|1014
9VTH|1|11|U|1015
9VTH|1|11|A|1016
9VTH|1|11|G|1017

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LB

60S ribosomal protein L8-like

Chain SI

40S ribosomal protein S14-2

Chain Sb

40S ribosomal protein S26