IL_9VTH_053
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGA*UUUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|11|U|1099, 9VTH|1|11|U|1101, 9VTH|1|11|G|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_053 not in the Motif Atlas
- Homologous match to IL_9H3G_205
- Geometric discrepancy: 0.1307
- The information below is about IL_9H3G_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|11|C|1037
9VTH|1|11|G|1038
9VTH|1|11|A|1039
*
9VTH|1|11|U|1098
9VTH|1|11|U|1099
9VTH|1|11|U|1100
9VTH|1|11|U|1101
9VTH|1|11|U|1102
9VTH|1|11|G|1103
9VTH|1|11|G|1104
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS5
- Chain SF
- Small ribosomal subunit protein uS8c
- Chain SJ
- 40S ribosomal protein S23
- Chain SM
- 40S ribosomal protein S13
- Chain SN
- 40S ribosomal protein S11
- Chain Sc
- 40S ribosomal protein S27
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