IL_9VTH_057
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_057 not in the Motif Atlas
- Homologous match to IL_9PN5_194
- Geometric discrepancy: 0.0743
- The information below is about IL_9PN5_194
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|G|1114
9VTH|1|11|G|1115
9VTH|1|11|A|1116
9VTH|1|11|G|1117
9VTH|1|11|U|1118
9VTH|1|11|A|1119
9VTH|1|11|U|1120
9VTH|1|11|G|1121
*
9VTH|1|11|U|1132
9VTH|1|11|G|1133
9VTH|1|11|A|1134
9VTH|1|11|A|1135
9VTH|1|11|A|1136
9VTH|1|11|C|1137
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain Lo
- 60s ribosomal protein l41-like
- Chain SJ
- 40S ribosomal protein S23
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