IL_9VTH_060

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9VTH|1|11|C|1161, 9VTH|1|11|C|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_060 not in the Motif Atlas

Homologous match to IL_9H3G_212

Geometric discrepancy: 0.0846

The information below is about IL_9H3G_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9VTH|1|11|A|1160
9VTH|1|11|C|1161
9VTH|1|11|C|1162
9VTH|1|11|A|1163
*
9VTH|1|11|U|1623
9VTH|1|11|C|1624
9VTH|1|11|C|1625
9VTH|1|11|C|1626
9VTH|1|11|U|1627

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain SE

40S ribosomal protein S5

Chain SG

40S ribosomal protein S16

Chain Sd

40S ribosomal protein S28