IL_9VTH_076
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAC*GCGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_076 not in the Motif Atlas
- Geometric match to IL_9H3G_228
- Geometric discrepancy: 0.1871
- The information below is about IL_9H3G_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.2
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|11|C|1394
9VTH|1|11|U|1395
9VTH|1|11|A|1396
9VTH|1|11|C|1397
*
9VTH|1|11|G|1411
9VTH|1|11|C|1412
9VTH|1|11|G|1413
9VTH|1|11|G|1414
9VTH|1|11|A|1415
9VTH|1|11|A|1416
9VTH|1|11|G|1417
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S5
- Chain SG
- 40S ribosomal protein S16
- Chain SW
- 40S ribosomal protein S17-like
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