IL_9VTH_079
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUUUAUAGC*GUAAUC
- Length
- 15 nucleotides
- Bulged bases
- 9VTH|1|11|U|1496, 9VTH|1|11|U|1498, 9VTH|1|11|A|1523, 9VTH|1|11|U|1524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_079 not in the Motif Atlas
- Homologous match to IL_9SUM_213
- Geometric discrepancy: 0.4697
- The information below is about IL_9SUM_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12629.2
- Basepair signature
- cWW-tSS-L-R-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|11|G|1493
9VTH|1|11|U|1494
9VTH|1|11|U|1495
9VTH|1|11|U|1496
9VTH|1|11|A|1497
9VTH|1|11|U|1498
9VTH|1|11|A|1499
9VTH|1|11|G|1500
9VTH|1|11|C|1501
*
9VTH|1|11|G|1520
9VTH|1|11|U|1521
9VTH|1|11|A|1522
9VTH|1|11|A|1523
9VTH|1|11|U|1524
9VTH|1|11|C|1525
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SB
- 30S ribosomal protein S3, chloroplastic
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SX
- 40S ribosomal protein S19-3-like
Coloring options: