IL_9VTH_081
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_081 not in the Motif Atlas
- Homologous match to IL_9PN5_219
- Geometric discrepancy: 0.1031
- The information below is about IL_9PN5_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28265.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9VTH|1|11|G|1546
9VTH|1|11|G|1547
9VTH|1|11|G|1548
9VTH|1|11|A|1549
9VTH|1|11|U|1550
9VTH|1|11|A|1551
*
9VTH|1|11|U|1572
9VTH|1|11|U|1573
9VTH|1|11|C|1574
9VTH|1|11|A|1575
9VTH|1|11|A|1576
9VTH|1|11|C|1577
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S18
- Chain SX
- 40S ribosomal protein S19-3-like
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