IL_9VTH_085

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

9VTH|1|11|A|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_085 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.2155

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9VTH|1|11|C|1650
9VTH|1|11|G|1651
9VTH|1|11|C|1652
*
9VTH|1|11|G|1762
9VTH|1|11|A|1763
9VTH|1|11|A|1764
9VTH|1|11|G|1765

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain Lo

60s ribosomal protein l41-like

Chain SJ

40S ribosomal protein S23