IL_9VTH_091

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_091 not in the Motif Atlas

Homologous match to IL_9H3G_242

Geometric discrepancy: 0.0798

The information below is about IL_9H3G_242

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9VTH|1|11|G|1681
9VTH|1|11|U|1682
9VTH|1|11|U|1683
9VTH|1|11|C|1684
*
9VTH|1|11|G|1731
9VTH|1|11|U|1732
9VTH|1|11|C|1733
9VTH|1|11|C|1734

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain La

60S ribosomal protein L24

Chain SR

40S ribosomal protein S6

Chain ST

40S ribosomal protein S8