IL_9VTH_098

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUG*CCC

Length

7 nucleotides

Bulged bases

9VTH|1|12|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_098 not in the Motif Atlas

Geometric match to IL_9PN5_139

Geometric discrepancy: 0.1527

The information below is about IL_9PN5_139

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9VTH|1|12|G|82
9VTH|1|12|A|83
9VTH|1|12|U|84
9VTH|1|12|G|85
*
9VTH|1|12|C|92
9VTH|1|12|C|93
9VTH|1|12|C|94

Current chains

Chain 12

5S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L10

Chain LP

60S ribosomal protein L7-4-like

Chain LX

60S ribosomal protein L18a