IL_9VTH_108
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGAGUUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9VTH|1|14|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_108 not in the Motif Atlas
- Homologous match to IL_9PN5_004
- Geometric discrepancy: 0.0723
- The information below is about IL_9PN5_004
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|14|C|29
9VTH|1|14|U|30
9VTH|1|14|G|31
9VTH|1|14|A|32
9VTH|1|14|G|33
9VTH|1|14|U|34
9VTH|1|14|U|35
9VTH|1|14|U|36
*
9VTH|1|14|A|43
9VTH|1|14|U|44
9VTH|1|14|C|45
9VTH|1|14|A|46
9VTH|1|14|A|47
9VTH|1|14|U|48
9VTH|1|14|A|49
9VTH|1|14|A|50
9VTH|1|14|G|51
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LS
- 60S ribosomal protein L13
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
- Chain Lp
- 60S ribosomal protein L44
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