IL_9VTH_114

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GACCC

Length

8 nucleotides

Bulged bases

9VTH|1|14|C|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_114 not in the Motif Atlas

Homologous match to IL_9H3G_015

Geometric discrepancy: 0.1674

The information below is about IL_9H3G_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9VTH|1|14|G|174
9VTH|1|14|A|175
9VTH|1|14|C|176
*
9VTH|1|14|G|234
9VTH|1|14|A|235
9VTH|1|14|C|236
9VTH|1|14|C|237
9VTH|1|14|C|238

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L35-like

Chain LS

60S ribosomal protein L13

Chain Lk

Ribosomal protein L37