IL_9VTH_119

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGC*GG

Length

6 nucleotides

Bulged bases

9VTH|1|14|G|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_119 not in the Motif Atlas

Homologous match to IL_9H3G_019

Geometric discrepancy: 0.0955

The information below is about IL_9H3G_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9VTH|1|14|C|433
9VTH|1|14|G|434
9VTH|1|14|G|435
9VTH|1|14|C|436
*
9VTH|1|14|G|632
9VTH|1|14|G|633

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L28-1-like

Chain Lg

60S ribosomal protein L32-1

Chain Lh

60S ribosomal protein L35a-3-like