IL_9VTH_121
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCAAAGC*GAACG
- Length
- 12 nucleotides
- Bulged bases
- 9VTH|1|14|C|523, 9VTH|1|14|A|524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_121 not in the Motif Atlas
- Homologous match to IL_9H3G_024
- Geometric discrepancy: 0.1579
- The information below is about IL_9H3G_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07936.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9VTH|1|14|C|522
9VTH|1|14|C|523
9VTH|1|14|A|524
9VTH|1|14|A|525
9VTH|1|14|A|526
9VTH|1|14|G|527
9VTH|1|14|C|528
*
9VTH|1|14|G|551
9VTH|1|14|A|552
9VTH|1|14|A|553
9VTH|1|14|C|554
9VTH|1|14|G|555
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LT
- 60S ribosomal protein L14-1
- Chain LX
- 60S ribosomal protein L18a
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