IL_9VTH_126

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAUC*GUGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_126 not in the Motif Atlas

Homologous match to IL_9H3G_029

Geometric discrepancy: 0.0822

The information below is about IL_9H3G_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9VTH|1|14|G|735
9VTH|1|14|G|736
9VTH|1|14|A|737
9VTH|1|14|U|738
9VTH|1|14|C|739
*
9VTH|1|14|G|750
9VTH|1|14|U|751
9VTH|1|14|G|752
9VTH|1|14|C|753
9VTH|1|14|A|754
9VTH|1|14|C|755

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LV

60S ribosomal protein L18-2

Chain Ld

60S ribosomal protein L29