IL_9VTH_140
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGCGUGCG*CAAG
- Length
- 12 nucleotides
- Bulged bases
- 9VTH|1|14|U|991, 9VTH|1|14|C|993, 9VTH|1|14|A|1114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_140 not in the Motif Atlas
- Homologous match to IL_9H3G_042
- Geometric discrepancy: 0.2846
- The information below is about IL_9H3G_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56068.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9VTH|1|14|C|987
9VTH|1|14|G|988
9VTH|1|14|C|989
9VTH|1|14|G|990
9VTH|1|14|U|991
9VTH|1|14|G|992
9VTH|1|14|C|993
9VTH|1|14|G|994
*
9VTH|1|14|C|1112
9VTH|1|14|A|1113
9VTH|1|14|A|1114
9VTH|1|14|G|1115
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LV
- 60S ribosomal protein L18-2
- Chain LY
- 60S ribosomal protein L21-1-like
- Chain Ld
- 60S ribosomal protein L29
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