IL_9VTH_144
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCCAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|14|C|1013
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_144 not in the Motif Atlas
- Homologous match to IL_9AXU_039
- Geometric discrepancy: 0.2929
- The information below is about IL_9AXU_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9VTH|1|14|G|1011
9VTH|1|14|C|1012
9VTH|1|14|C|1013
9VTH|1|14|A|1014
9VTH|1|14|A|1015
9VTH|1|14|U|1016
*
9VTH|1|14|A|1058
9VTH|1|14|A|1059
9VTH|1|14|A|1060
9VTH|1|14|C|1061
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 12
- 5S ribosomal RNA; 5S rRNA
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
- Chain LY
- 60S ribosomal protein L21-1-like
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