IL_9VTH_145
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_145 not in the Motif Atlas
- Homologous match to IL_9H3G_047
- Geometric discrepancy: 0.092
- The information below is about IL_9H3G_047
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
9VTH|1|14|A|1018
9VTH|1|14|U|1019
9VTH|1|14|U|1020
9VTH|1|14|A|1021
*
9VTH|1|14|U|1053
9VTH|1|14|U|1054
9VTH|1|14|C|1055
9VTH|1|14|U|1056
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 12
- 5S ribosomal RNA; 5S rRNA
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
Coloring options: