IL_9VTH_147
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCAUCG*CGAC
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|14|U|1028, 9VTH|1|14|C|1029
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_147 not in the Motif Atlas
- Homologous match to IL_9H3G_049
- Geometric discrepancy: 0.4625
- The information below is about IL_9H3G_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74852.2
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9VTH|1|14|G|1025
9VTH|1|14|C|1026
9VTH|1|14|A|1027
9VTH|1|14|U|1028
9VTH|1|14|C|1029
9VTH|1|14|G|1030
*
9VTH|1|14|C|1046
9VTH|1|14|G|1047
9VTH|1|14|A|1048
9VTH|1|14|C|1049
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
Coloring options: