IL_9VTH_151

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUACG*CUACA

Length

10 nucleotides

Bulged bases

9VTH|1|14|C|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_151 not in the Motif Atlas

Homologous match to IL_9H3G_054

Geometric discrepancy: 0.0823

The information below is about IL_9H3G_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9VTH|1|14|U|1178
9VTH|1|14|U|1179
9VTH|1|14|A|1180
9VTH|1|14|C|1181
9VTH|1|14|G|1182
*
9VTH|1|14|C|1340
9VTH|1|14|U|1341
9VTH|1|14|A|1342
9VTH|1|14|C|1343
9VTH|1|14|A|1344

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 12

5S ribosomal RNA; 5S rRNA

Chain LP

60S ribosomal protein L7-4-like

Chain LV

60S ribosomal protein L18-2

Chain Lg

60S ribosomal protein L32-1

Chain Lh

60S ribosomal protein L35a-3-like