IL_9VTH_154
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUAACCUAG*CUUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9VTH|1|14|C|1202, 9VTH|1|14|C|1203, 9VTH|1|14|U|1204, 9VTH|1|14|U|1328, 9VTH|1|14|A|1330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_154 not in the Motif Atlas
- Homologous match to IL_9H3G_057
- Geometric discrepancy: 0.0835
- The information below is about IL_9H3G_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.4
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|14|C|1198
9VTH|1|14|U|1199
9VTH|1|14|A|1200
9VTH|1|14|A|1201
9VTH|1|14|C|1202
9VTH|1|14|C|1203
9VTH|1|14|U|1204
9VTH|1|14|A|1205
9VTH|1|14|G|1206
*
9VTH|1|14|C|1326
9VTH|1|14|U|1327
9VTH|1|14|U|1328
9VTH|1|14|A|1329
9VTH|1|14|A|1330
9VTH|1|14|G|1331
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L9-1
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LT
- 60S ribosomal protein L14-1
- Chain LX
- 60S ribosomal protein L18a
- Chain Ln
- Ubiquitin-60S ribosomal protein L40
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