IL_9VTH_158

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9VTH|1|14|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_158 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.3201

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|U|1230
9VTH|1|14|U|1231
9VTH|1|14|A|1232
9VTH|1|14|A|1233
9VTH|1|14|G|1234
9VTH|1|14|A|1235
9VTH|1|14|C|1236
9VTH|1|14|A|1237
9VTH|1|14|G|1238
*
9VTH|1|14|C|1295
9VTH|1|14|C|1296
9VTH|1|14|G|1297
9VTH|1|14|A|1298
9VTH|1|14|A|1299

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LX

60S ribosomal protein L18a

Chain Ln

Ubiquitin-60S ribosomal protein L40