IL_9VTH_162

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_162 not in the Motif Atlas

Homologous match to IL_9H3G_064

Geometric discrepancy: 0.075

The information below is about IL_9H3G_064

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9VTH|1|14|G|1455
9VTH|1|14|U|1456
9VTH|1|14|A|1457
9VTH|1|14|G|1458
9VTH|1|14|U|1459
9VTH|1|14|A|1460
9VTH|1|14|G|1461
*
9VTH|1|14|C|2357
9VTH|1|14|G|2358
9VTH|1|14|A|2359
9VTH|1|14|A|2360
9VTH|1|14|A|2361
9VTH|1|14|C|2362

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 13

5.8S ribosomal RNA; 5.8S rRNA

Chain LD

60S ribosomal protein L4-like

Chain LL

60S ribosomal protein L17-1 isoform X2