IL_9VTH_164

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAC*GCA

Length

8 nucleotides

Bulged bases

9VTH|1|14|C|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_164 not in the Motif Atlas

Homologous match to IL_9H3G_066

Geometric discrepancy: 0.1046

The information below is about IL_9H3G_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9VTH|1|14|U|1512
9VTH|1|14|G|1513
9VTH|1|14|A|1514
9VTH|1|14|A|1515
9VTH|1|14|C|1516
*
9VTH|1|14|G|1524
9VTH|1|14|C|1525
9VTH|1|14|A|1526

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L17-1 isoform X2

Chain LW

Ribosomal protein L19

Chain Lm

60S ribosomal protein L39-3