IL_9VTH_179

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGCCCA*UCCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_179 not in the Motif Atlas

Homologous match to IL_9H3G_081

Geometric discrepancy: 0.0679

The information below is about IL_9H3G_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27580.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9VTH|1|14|U|1707
9VTH|1|14|G|1708
9VTH|1|14|C|1709
9VTH|1|14|C|1710
9VTH|1|14|C|1711
9VTH|1|14|A|1712
*
9VTH|1|14|U|1742
9VTH|1|14|C|1743
9VTH|1|14|C|1744
9VTH|1|14|A|1745
9VTH|1|14|G|1746

Current chains

Chain 14

25S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL34