IL_9VTH_180
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGGAAAC*GGAGGUA
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|14|A|1721, 9VTH|1|14|A|1734
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_180 not in the Motif Atlas
- Homologous match to IL_9PN5_071
- Geometric discrepancy: 0.0922
- The information below is about IL_9PN5_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.4
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
9VTH|1|14|U|1716
9VTH|1|14|G|1717
9VTH|1|14|G|1718
9VTH|1|14|A|1719
9VTH|1|14|A|1720
9VTH|1|14|A|1721
9VTH|1|14|C|1722
*
9VTH|1|14|G|1732
9VTH|1|14|G|1733
9VTH|1|14|A|1734
9VTH|1|14|G|1735
9VTH|1|14|G|1736
9VTH|1|14|U|1737
9VTH|1|14|A|1738
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LW
- Ribosomal protein L19
- Chain Lb
- 60S ribosomal protein L27
- Chain Le
- 60S ribosomal protein L30
- Chain Lq
- 60S ribosomal protein L37a
- Chain SM
- 40S ribosomal protein S13
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