IL_9VTH_186
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9VTH|1|14|A|1937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_186 not in the Motif Atlas
- Homologous match to IL_9H3G_088
- Geometric discrepancy: 0.0784
- The information below is about IL_9H3G_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|14|C|1924
9VTH|1|14|G|1925
9VTH|1|14|U|1926
9VTH|1|14|A|1927
9VTH|1|14|A|1928
9VTH|1|14|C|1929
*
9VTH|1|14|G|1934
9VTH|1|14|G|1935
9VTH|1|14|A|1936
9VTH|1|14|A|1937
9VTH|1|14|A|1938
9VTH|1|14|A|1939
9VTH|1|14|G|1940
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 11
- Small subunit ribosomal RNA; SSU rRNA
- Chain LW
- Ribosomal protein L19
- Chain Lo
- 60s ribosomal protein l41-like
- Chain Lq
- 60S ribosomal protein L37a
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