IL_9VTH_195
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_195 not in the Motif Atlas
- Homologous match to IL_9H3G_097
- Geometric discrepancy: 0.0924
- The information below is about IL_9H3G_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.4
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|14|U|2214
9VTH|1|14|C|2215
9VTH|1|14|A|2216
9VTH|1|14|A|2217
9VTH|1|14|A|2218
9VTH|1|14|G|2219
9VTH|1|14|U|2220
*
9VTH|1|14|A|2231
9VTH|1|14|A|2232
9VTH|1|14|C|2233
9VTH|1|14|C|2234
9VTH|1|14|A|2235
9VTH|1|14|A|2236
9VTH|1|14|G|2237
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 10
- RNA (204-MER)
- Chain LB
- 60S ribosomal protein L8-like
- Chain Lj
- 60S ribosomal protein L36
- Chain Lp
- 60S ribosomal protein L44
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