IL_9VTH_197

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9VTH|1|14|A|2284, 9VTH|1|14|C|2290, 9VTH|1|14|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_197 not in the Motif Atlas

Homologous match to IL_9PN5_087

Geometric discrepancy: 0.1

The information below is about IL_9PN5_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

9VTH|1|14|C|2280
9VTH|1|14|C|2281
9VTH|1|14|A|2282
9VTH|1|14|A|2283
9VTH|1|14|A|2284
9VTH|1|14|U|2285
9VTH|1|14|G|2286
9VTH|1|14|C|2287
9VTH|1|14|C|2288
9VTH|1|14|U|2289
9VTH|1|14|C|2290
9VTH|1|14|G|2291
*
9VTH|1|14|C|2307
9VTH|1|14|G|2308
9VTH|1|14|C|2309
9VTH|1|14|G|2310

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 11

Small subunit ribosomal RNA; SSU rRNA

Chain Lo

60s ribosomal protein l41-like