IL_9VTH_207

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAAUC*GGGC

Length

11 nucleotides

Bulged bases

9VTH|1|14|G|2527, 9VTH|1|14|A|2529, 9VTH|1|14|U|2530, 9VTH|1|14|G|2588, 9VTH|1|14|G|2589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_207 not in the Motif Atlas

Homologous match to IL_9H3G_109

Geometric discrepancy: 0.0966

The information below is about IL_9H3G_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52092.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

6

Unit IDs

9VTH|1|14|G|2525
9VTH|1|14|U|2526
9VTH|1|14|G|2527
9VTH|1|14|A|2528
9VTH|1|14|A|2529
9VTH|1|14|U|2530
9VTH|1|14|C|2531
*
9VTH|1|14|G|2587
9VTH|1|14|G|2588
9VTH|1|14|G|2589
9VTH|1|14|C|2590

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 13

5.8S ribosomal RNA; 5.8S rRNA

Chain LB

60S ribosomal protein L8-like

Chain LM

Large ribosomal subunit protein uL23

Chain LR

60S ribosomal protein L7a