IL_9VTH_208

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_208 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.134

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9VTH|1|14|G|2536
9VTH|1|14|C|2537
9VTH|1|14|G|2538
*
9VTH|1|14|C|2550
9VTH|1|14|U|2551
9VTH|1|14|C|2552

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L8-like

Chain LR

60S ribosomal protein L7a