IL_9VTH_236
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUG*CUUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_236 not in the Motif Atlas
- Homologous match to IL_9H3G_140
- Geometric discrepancy: 0.0918
- The information below is about IL_9H3G_140
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
9VTH|1|14|U|3292
9VTH|1|14|U|3293
9VTH|1|14|U|3294
9VTH|1|14|G|3295
*
9VTH|1|14|C|3303
9VTH|1|14|U|3304
9VTH|1|14|U|3305
9VTH|1|14|A|3306
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L3
- Chain LL
- 60S ribosomal protein L17-1 isoform X2
- Chain Lf
- 60S ribosomal protein L31
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