IL_9VTH_239

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUA*UUCAGC

Length

9 nucleotides

Bulged bases

9VTH|1|14|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_239 not in the Motif Atlas

Homologous match to IL_9PN5_128

Geometric discrepancy: 0.1119

The information below is about IL_9PN5_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.4

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9VTH|1|14|G|3320
9VTH|1|14|U|3321
9VTH|1|14|A|3322
*
9VTH|1|14|U|3365
9VTH|1|14|U|3366
9VTH|1|14|C|3367
9VTH|1|14|A|3368
9VTH|1|14|G|3369
9VTH|1|14|C|3370

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain Lf

60S ribosomal protein L31