IL_9VTH_240

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

9VTH|1|14|G|3361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_240 not in the Motif Atlas

Homologous match to IL_9PN5_129

Geometric discrepancy: 0.0892

The information below is about IL_9PN5_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.4

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

10

Unit IDs

9VTH|1|14|U|3324
9VTH|1|14|G|3325
9VTH|1|14|U|3326
9VTH|1|14|A|3327
9VTH|1|14|A|3328
9VTH|1|14|G|3329
*
9VTH|1|14|C|3359
9VTH|1|14|U|3360
9VTH|1|14|G|3361
9VTH|1|14|A|3362
9VTH|1|14|G|3363

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain La

60S ribosomal protein L24

Chain Lf

60S ribosomal protein L31