IL_9VVI_033
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 9VVI|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_033 not in the Motif Atlas
- Homologous match to IL_6CZR_141
- Geometric discrepancy: 0.1752
- The information below is about IL_6CZR_141
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
9VVI|1|A|U|662
9VVI|1|A|A|663
9VVI|1|A|G|664
9VVI|1|A|A|665
9VVI|1|A|G|666
*
9VVI|1|A|U|740
9VVI|1|A|G|741
9VVI|1|A|G|742
9VVI|1|A|A|743
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6, fully modified isoform
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18
Coloring options: