IL_9VVI_035
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 9VVI|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_035 not in the Motif Atlas
- Geometric match to IL_8B0X_034
- Geometric discrepancy: 0.141
- The information below is about IL_8B0X_034
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9VVI|1|A|U|684
9VVI|1|A|G|685
9VVI|1|A|U|686
9VVI|1|A|A|687
9VVI|1|A|G|688
*
9VVI|1|A|C|699
9VVI|1|A|G|700
9VVI|1|A|U|701
9VVI|1|A|A|702
9VVI|1|A|G|703
9VVI|1|A|A|704
9VVI|1|A|G|705
9VVI|1|A|A|706
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain W
- Probable ATP-binding protein YheS
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: