IL_9VVI_054

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9VVI|1|A|A|1257, 9VVI|1|A|A|1280, 9VVI|1|A|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_054 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.5025

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9VVI|1|A|G|1255
9VVI|1|A|A|1256
9VVI|1|A|A|1257
9VVI|1|A|G|1258
*
9VVI|1|A|C|1277
9VVI|1|A|G|1278
9VVI|1|A|G|1279
9VVI|1|A|A|1280
9VVI|1|A|C|1281
9VVI|1|A|C|1282

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14