IL_9VVI_088
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AAUUC*GUUAU
- Length
- 10 nucleotides
- Bulged bases
- 9VVI|1|a|U|846, 9VVI|1|a|U|931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_088 not in the Motif Atlas
- Geometric match to IL_8B0X_179
- Geometric discrepancy: 0.109
- The information below is about IL_8B0X_179
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01742.1
- Basepair signature
- cWW-L-cWW-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9VVI|1|a|A|844
9VVI|1|a|A|845
9VVI|1|a|U|846
9VVI|1|a|U|847
9VVI|1|a|C|848
*
9VVI|1|a|G|930
9VVI|1|a|U|931
9VVI|1|a|U|932
9VVI|1|a|A|933
9VVI|1|a|U|934
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: