IL_9VXM_018

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_018 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.2076

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near cWW basepair

Broad Annotation

Isolated near cWW basepair

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9VXM|1|A|U|2168
9VXM|1|A|A|2169
9VXM|1|A|G|2170
*
9VXM|1|A|C|2190
9VXM|1|A|A|2191
9VXM|1|A|A|2192

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL10m

Chain J

Large ribosomal subunit protein uL11m

Chain l

Large ribosomal subunit protein mL54