IL_9VXM_058
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCUGUAC*GGACAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_058 not in the Motif Atlas
- Geometric match to IL_8GLP_159
- Geometric discrepancy: 0.1723
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.1
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9VXM|1|A|C|3119
9VXM|1|A|C|3120
9VXM|1|A|C|3121
9VXM|1|A|U|3122
9VXM|1|A|G|3123
9VXM|1|A|U|3124
9VXM|1|A|A|3125
9VXM|1|A|C|3126
*
9VXM|1|A|G|3131
9VXM|1|A|G|3132
9VXM|1|A|A|3133
9VXM|1|A|C|3134
9VXM|1|A|A|3135
9VXM|1|A|A|3136
9VXM|1|A|G|3137
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL14m
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